Builds a heatmap summarizing pathway annotations across all identified modules. The visualization displays the proportion of module genes associated with each enriched pathway, enabling rapid comparison of functional themes between modules. Filtering options allow users to restrict displayed pathways based on adjusted p-values and gene overlap thresholds. The resulting heatmap provides a compact overview of the functional landscape revealed by GAM-clustering.
Usage
getAnnotationHeatmap(
work.dir,
padj.threshold = Inf,
threshold = 0.05,
file_name = "Modules_heatmap.png"
)